In Aperture Priority auto I like Matrix. In Manual mode, center-weighted metering mode is very good, using the scribed 12mm diameter circle in the finder as the main area of emphasis. For people who have never used a Nikon, or have not read the instruction manual fully, they are often surprised that there is a 12mm diameter area actually indicated on the viewfinder screen itself, which literally SHOWS WHERE the center-weighted metering's area of main bias is.
In manual mode, I often don't use the meter, per se, but take a test exposure, review the histogram, and the deliberately shoot "off", either above or below the indicated,so-called correct reading. Because of this, I have become lazy, and have stopped religiously switching the metering mode from Matrix in Aperture Priority auto to Center Weighted when I switch to Manual metering.
Exactly how one meters depends on the method. I shoot a lot of fairly telephoto view images, which easily eliminates a lot of sky values from my meter's view, so Matrix often doesn't see the sky and inflate the readings. When there is strong backlighting, I will do close-up meter readings off of the face, usually at 200mm zoom from about seven feet away, and see what that reading is, do a test shot, and see how my histogram and blinkies are.