Compur is right, if you use alkaline fixer short stop could be skipped altogether. I personally never use stop just two bath fixer (regular). The supposition is, that for flat grain films drastic changes in pH might cause dislocation of the grain in emulsion reducing the sharpness. The same with temperature, which should be constant through the whole process and the contact with water should be also short etc.
Presoaking with two bath developer seems to be of not that much importance since the first bath is a constant agitation. In theory AH layer should have no influence on development, but you never know, if some of it didn't stain the emulsion, even a little. It may have an influence on contrast. Then, if 120 is not prewashed this dye will stay in part A of Diafine forever and build up with every new roll. What that will do, I don't know. I am using two bath development system every day, but in totally different way, so no experience here.
Kodak stop indicator is rather aggressive, try very light concentration to bring the emulsion to neutrality rather, than to acidity so fixer doesn't have much to use up it's buffer.
What films are you shooting ? Remember, tabular emulsion is thin, absorbs less, 5 min in part B might be an overkill. How long part B of Diafine should last ?