AFAICS the D3 and D700 can already operate the newest feature, which would be electronic apertures.
These are marked by an "E" in the name of the lens, for example AF-S 70-200mm f2.8 E VR FL or PC-E 24mm f3.5; the "E" replaces the "G" of other AF-S lenses, which means gelded / no aperture ring on the lens. Before that we got "D" on AF and some AF-S lenses, which means "distance" and states that the flash gets distance information from this lens; older AF lenses dont have any such special letter.
There is also an "E-Series" kind of lenses, a sort-of cheap lens back then, which however to todays standards have pretty good built, and of which some are very beloved (for example the Nikon 100mm f2.8 E-Series). These have nothing to do with the new "E" lenses,.