Not sure what's going on here, how you're shooting, how the camera is set up. You have shot a subject that is mis-focused by a few inches, at 600mm on a 1.5x camera, so you've missed focus by a SMALL AMOUNT...HAVE NOT SEEN anything to show what the lens ca do, only what you cannot do--and, at ISO 1600...from what? A NEF? an SOOC JPEG? Why is the noise reduction so danged hugh?
Long lens technique is not something you learn in one day. You just missed a 1,000-meter shot at a big buck deer: is the problem with the rifle's scope, the shooter's breath control, or the absurdity of taking a shot under such a crazy scenario?
What can the lens do over a DAY? How many frames did you shoot? Why do you expect to be able to shoot such an exotic lens like a pro on day one back from repairs. You CAMERA could easily be out of whack. Not every lens is calibrated for every camera, not ever camera is calibrated for every lens. The test shots...all two of them...you think the lens is the issue, but I can;t tell much from two frames shot and processed as seen here.
You are using a very specialized tool, and on a bargain-level camera with an awful viewfinder, and you have almost zero experience with it. There's a lot wrong with this scenario. The chances are 50-50 that there's nothing wrong with "the lens". I don't want to blame you, but there are unanswered questions, and you have how many hours' worth of experience shooting this thing? WHat do you expect the songbird focus keeper rate to be with a new lens? HOW MANY frames did the two mis-focused ones we saw come from? 100? 10? 40?