Your camera is fine, your ability to see still needs improvement. That's really just a process you go through, not a character flaw.
The same lens on a different camera can be better or not so better. You can pretty much be assured any testing facility for a lens will not be testing that lens with an older camera or a lower price range camera. If you haven't checked to see that your camera has the latest software/firmware updates, do that first. Then don't rely on the lens/camera system only. To test a lens on your own, make sure you've eliminated all of the other variables which could affect the image quality. That generally starts with using a tripod to assure there is no camera shake or other movement being introduced by the shooter. A tripod also assures you can have the same image from corner to corner of the image for your comparisons.
Auto focus is pretty good nowdays but it may not be your best choice in some situations. Manual focus in available on your lens and you should learn how to make the most of the feature. One lens may do auto focus better at landscape distances and less so at close in focus points. In general, I've found the 50 mm lens to be a bit better when given a manual focus tweak at close in focus points but perfectly fine when shooting distant subjects. But the new STM kit lens that came with my SL1 can focus at a closer minimum distance than the older design of the 50 mm. Read up on your specific lens and know its strengths and weaknesses. If you're trying to critique a lens, it generally helps to know how to critique a lens. However, realize the folks who criticize equipment for a living have a slightly different viewpoint than the average weekend photographer. Like the folks reviewing wine will have a different experience with this vintage from this producer than you and I will if we simply have wine with our dinner at a mid-priced restaurant. Don't know about you but I'm not so picky in that instance that I care whether it's a 2009 or a 2010.
Your 50 mm is great for some things and not always the choice for others. If you learn when to use the lens, you'll know why it is good and bad for certain situations. More importantly, if you know why your kit lens is not the best choice for some situations, you'll understand why the 50 mm is the better choice for those situations. But, if you're expecting a lens to make your photos better overall, then you are going to be disappointed. The lens is only a tool for you to learn how best to control.
When it comes to aperture, that's a fairly complex subject IMO. When doing macro or close in photography, f-2.8 is very different than when you are shooting a landscape. Focal length and focal distance both affect the depth of field you will have with a similar aperture. Therefore, if you were to set up a line of soup cans and photograph them from three feet away you would notice the effects of aperture at that focal distance. If you were to set up a line of trash cans and photograph them from forty feet away, you would notice a different effect of the same aperture. (An adjustable dof app may make your studies a bit easier here;
A Flexible Depth of Field Calculator Put such an app on your smart phone to have with you in the field.) Student photographers often stop their lens down to, say, f-16 for a landscape when that is seldom the best aperture for any lens and doing so introduces other problems with available light vs shutter speed vs ISO. Reading up a bit on hyper-focal distance might further explain what's happening with your lens when you alter aperture.
A single focal length lens though is going to be superior overall to a kit zoom when you know the time to use either. But just owning the lens isn't going to make you a better photographer. You should learn your lens just as you are learning your camera. Together they form the system you will use to create better photos.
Finally, how are you viewing your images? If your processing system doesn't provide the ability to get the most from your camera's data, then it's very difficult to make useful judgements regarding what the camera is capable of achieving. If you are not yet able to use your processing software to get a higher quality result, you may be putting the cart before the horse when judging your lens. RAW files will look one way and Jpegs will look another. Know what you're looking at on your monitor before you judge the lens.
Don't assume everything about photography comes down to sharpness;
Lens Sharpness